Package index • xpose.xtras

All functions

add_prm_association() drop_prm_association(): Describe parameter associations

add_relationship() remove_relationship(): Add relationship(s) to an xpose_set

add_xpdb(): Add one or more xpdb objects to an xpose_set

backfill_iofv(): Add individual objective function to data

catdv_vs_dvprobs(): Non-simulation based likelihood model diagnostic

check_levels(): Verify validity of level list

check_xpose_set() check_xpose_set_item(): Check an xpose_set object

is_formula_list(): Convenience functions used in package

desc_from_comments(): Backfill utility for descriptions

diagram_lineage() experimental: Visualize xpose_set

diff(<xpose_set>): Display deltaOFV values across xpose_set

duplicated(<xpose_set>): Check if any xpose_data objects are repeated in xpose_set

eta_vs_catcov(): Eta categorical covariate plots (typical)

eta_vs_contcov(): Eta continuous covariate plots (typical)

expose_param(): Expose a model parameter of xpdb objects in an xpose_set

expose_property(): Expose a property of xpdb objects in an xpose_set

fill_prob_subprob_method(): Place .problem, .subprob and .method into environment consistently

filter(<xpose_set>): Filtration method for xpose_set

focus_xpdb() unfocus_xpdb() focused_xpdbs() focus_function() focus_qapply(): Focus on an xpdb object in an xpose_set

get_prm(): Access model parameters

get_prop(): Generic function to extract a property from a model summary

get_index() set_index(): Get full index for xpose_data data

get_shk(): Get shrinkage estimates from model summary

grab_xpose_plot(): Grab processed xpose_plot

`%p%`: Binary check if LHS is parent of LHS

eta_grid() cov_grid() eta_vs_cov_grid(): Grid plots

iofv_vs_mod(): Objective function changes across models

irep(): Add simulation counter

is_xp_xtras(): Basic class checker for xp_xtras

as_leveler() is_leveler() lvl_bin() lvl_sex() lvl_inord(): Level-defining helper functions

list_dv_probs(): For a categorical DV variable, show associated probabilities

list_vars(): Updates to list_vars

dv_vs_ipred_modavg() dv_vs_pred_modavg() ipred_vs_idv_modavg() pred_vs_idv_modavg() plotfun_modavg() experimental: Model average plots

modavg_xpdb() experimental: Create a model-averaged xpose data object

mutate_x() rename_x(): Add, remove or rename variables in an xpdb

mutate(<xpose_set>): Mutation method for xpose_set

mutate_prm(): Transform parameter values in place

pheno_base: An xp_xtras example of a base model

pheno_final: An xp_xtras example of a final model

pheno_saem: An xp_xtras example of a final model

pheno_set: A more complex example of xpose_set object

pkpd_m3: An xp_xtras example of an M3 model

pkpd_m3_df: An xp_xtras example of an M3 model (dataset)

ipred_vs_ipred() pred_vs_pred(): Compare model predictions

proc_levels(): Convert levels list into tibble

pull(<xpose_set>): Pulling method for xpose_set

rename(<xpose_set>): Renaming method for xpose_set

reportable_digits(): Reportable digits for model fit

reshape_set() unreshape_set(): Convert xpose_set to a nested list.

select(<xpose_set>): Selection method for xpose_set

set_base_model() get_base_model() unset_base_model(): Base model for xpose_set

set_dv_probs(): Set probability columns for categorical endpoints

set_option(): Set an xpose option

set_prop(): Set a summary property

set_var_levels(): Set variable levels

set_var_types() experimental: Set variable types

set_var_types(<default>) experimental: Set variable types

set_var_types(<xp_xtras>) experimental: Set variable types

set_var_types_x() experimental: Set variable types

shark_colors(): Change colors of shark plots

shark_plot() dofv_vs_id(): Individual contributions to dOFV

group_by_x() ungroup_x(): Group/ungroup and summarize variables in an xpdb

val2lvl(): Translate values to levels

vismo_dtmm: An xp_xtras example of the discrete-time Markov model of categorical vismodegib data

vismo_pomod: An xp_xtras example of the proportional odds categorical vismodegib model

vismodegib: A tibble of mock data used for fitting vismodegib models

prm_waterfall() eta_waterfall() iofv_waterfall(): Specific waterfall plots

wrap_xp_ggally(): Ensure consistent style with GGally functions

xp4_xtra_theme(): Updated version of the xpose4 theme

xp_var(): xp_var Method

xp_xtra_theme(): Extra theme defaults

as_xpdb_x() as_xp_xtras() check_xpdb_x() check_xp_xtras(): Convert an object to an xpose_data and xp_xtras object

xpdb_set: An example xpose_set object

xpdb_x: An example xp_xtras object

xplot_boxplot(): Default xpose boxplot function

xplot_pairs(): Wrapper around ggpairs

xpose_set(): Generate a set of xpdb objects

xset_lineage(): Determine lineage within a set

xset_waterfall(): Waterfall plot